Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs409893 chr21:46018094 T/C 2.27E-7 500 3.97 24.73 21.7 KM Plot
LGG rs4285908 chr11:73646481 G/T 1.67E-5 497 23.52 23.98 19.27 KM Plot
LGG rs4417648 chr19:883725 A/G 8.53E-5 495 20.82 25.87 20.37 KM Plot
LGG rs4457918 chr14:24422995 T/G 4.03E-5 509 23.58 21.15 15.53 KM Plot
LGG rs4522091 chr10:874116 G/T 5.06E-7 506 21.7 24.52 14.43 KM Plot
LGG rs4568951 chr10:86024973 A/G 3.86E-6 509 21.6 24.32 18.63 KM Plot
LGG rs4637609 chr6:88252601 G/A 5.05E-6 505 22.58 24.5 4.08 KM Plot
LGG rs4749228 chr10:27433618 C/T 9.54E-5 506 24.6 20.43 19.03 KM Plot
LGG rs4880780 chr10:1214532 A/G 4.93E-5 492 21.45 26.4 17.77 KM Plot
LGG rs4917680 chr10:116080216 A/G 7.34E-5 505 17.93 23.95 22.78 KM Plot
LGG rs4918898 chr10:116079901 T/C 8.15E-5 503 17.93 23.95 22.78 KM Plot
LGG rs4919369 chr10:101382252 A/C 1.15E-5 509 22.47 23.63 14.52 KM Plot
LGG rs5554 chr2:40339695 A/T 1.56E-5 502 22.87 22.03 7.13 KM Plot
LGG rs55676004 chr8:143419655 C/T 1.18E-5 496 23.73 18.8 3.7 KM Plot
LGG rs55679721 chr5:169021126 C/T 1.53E-8 507 22.37 23.63 6.83 KM Plot